CRISPRone

CRISPRone report for GCA_004318365.1_ASM431836v1

♦ Seq 1: BIVV01000154.1 Clostridioides difficile FD257 DNA, sequence154, whole genome shotgun sequence

⇒Summary: seq-len = 2541 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 170-463 bp Zoom in on locus 1 x5 CRISPR array Location: 170-463 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 170-463 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 170-463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVV01000002.1 Clostridioides difficile FD257 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 122022 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69132-76997 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69132-70241 bp Gene: pfam01881:cas6 Type: other Location: 70499-71236 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71241-72716 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72736-73749 bp Gene: cd09693:cas5 Type: Type-I Location: 73765-74562 bp Gene: cd09641:cas3HD Type: Type-I Location: 74589-76997 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVV01000075.1 Clostridioides difficile FD257 DNA, sequence075, whole genome shotgun sequence

⇒Summary: seq-len = 17851 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17757-17852 bp Zoom in on locus 1 x2 CRISPR array Location: 17757-17852 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17757-17852 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17757-17852 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVV01000018.1 Clostridioides difficile FD257 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 50702 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-10790 bp Zoom in on locus 1 x46 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-1180 bp Gene: pfam05107:cas7b Type: Type-I Location: 1173-2162 bp Gene: cd09693:cas5 Type: Type-I Location: 2164-2904 bp Gene: cd09641:cas3HD Type: Type-I Location: 2928-5486 bp CRISPR array Location: 5676-8678 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 5676-8678 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 8762-9256 bp Gene: cd09722:cas1 Type: universal Location: 9282-10289 bp Gene: cd09725:cas2 Type: universal Location: 10500-10790 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5676-8678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVV01000130.1 Clostridioides difficile FD257 DNA, sequence130, whole genome shotgun sequence

⇒Summary: seq-len = 6039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-152 bp Zoom in on locus 1 x3 CRISPR array Location: 0-152 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-152 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVV01000015.1 Clostridioides difficile FD257 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 59226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52768-53189 bp Zoom in on locus 1 x7 CRISPR array Location: 52768-53189 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 52768-53189 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52768-53189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVV01000004.1 Clostridioides difficile FD257 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 107789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103415-103973 bp Zoom in on locus 1 x9 CRISPR array Location: 103415-103973 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 103415-103973 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103415-103973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVV01000176.1 Clostridioides difficile FD257 DNA, sequence176, whole genome shotgun sequence

⇒Summary: seq-len = 1265 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-962 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-255 bp Gene: cd09652:cas6 Type: other Location: 267-962 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIVV01000007.1 Clostridioides difficile FD257 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 86186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3522-4273 bp Zoom in on locus 1 x12 CRISPR array Location: 3522-4273 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3522-4273 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3522-4273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIVV01000136.1 Clostridioides difficile FD257 DNA, sequence136, whole genome shotgun sequence

⇒Summary: seq-len = 5534 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2116-2477 bp Zoom in on locus 1 x6 CRISPR array Location: 2116-2477 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2116-2477 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2116-2477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIVV01000037.1 Clostridioides difficile FD257 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 38338 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29078-29240 bp Zoom in on locus 1 x3 CRISPR array Location: 29078-29240 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29078-29240 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29078-29240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)