CRISPRone

CRISPRone report for GCA_004318445.1_ASM431844v1

♦ Seq 1: BIVZ01000029.1 Clostridioides difficile FD261 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 53618 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51722-51882 bp Zoom in on locus 1 x3 CRISPR array Location: 51722-51882 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 51722-51882 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51722-51882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVZ01000014.1 Clostridioides difficile FD261 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 94663 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33160-42883 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33160-35568 bp Gene: cd09693:cas5 Type: Type-I Location: 35595-36392 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36408-37421 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 37441-38907 bp Gene: pfam01881:cas6 Type: other Location: 38912-39649 bp Gene: unk Type: unknown Location: 39963-40421 bp Gene: cas14:cas14 Type: Type-V Location: 40449-41621 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 41774-42883 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVZ01000003.1 Clostridioides difficile FD261 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 174809 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76869-79923 bp 2 Locus 2: 170773-171392 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 CRISPR array Location: 76869-77029 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 76869-77029 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79697-79923 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 79697-79923 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 170773-171392 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 170773-171392 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76869-77029 bp]: array | spacers
           [Locus range 79697-79923 bp]: array | spacers
           [Locus range 170773-171392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVZ01000025.1 Clostridioides difficile FD261 DNA, sequence025, whole genome shotgun sequence

⇒Summary: seq-len = 61807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11584-11678 bp Zoom in on locus 1 x2 CRISPR array Location: 11584-11678 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11584-11678 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11584-11678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVZ01000020.1 Clostridioides difficile FD261 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 72573 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17892-18311 bp Zoom in on locus 1 x7 CRISPR array Location: 17892-18311 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 17892-18311 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17892-18311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVZ01000009.1 Clostridioides difficile FD261 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 126098 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97887-98113 bp Zoom in on locus 1 x4 CRISPR array Location: 97887-98113 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97887-98113 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97887-98113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)