CRISPRone

CRISPRone report for GCA_004318465.1_ASM431846v1

♦ Seq 1: BIWA01000016.1 Clostridioides difficile FD262 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 39261 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14708-21241 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 14708-15355 bp Gene: pfam01881:cas6 Type: other Location: 15346-16110 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 16112-17278 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17299-18369 bp Gene: COG1203:cas3 Type: Type-I Location: 18380-20365 bp CRISPR array Location: 20618-21241 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20618-21241 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20618-21241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWA01000104.1 Clostridioides difficile FD262 DNA, sequence104, whole genome shotgun sequence

⇒Summary: seq-len = 14022 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6288 bp Zoom in on locus 1 x23 Gene: cd09687:cas7 Type: Subtype-I-B Location: 2-613 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 615-1316 bp Gene: COG1203:cas3 Type: Type-I Location: 1327-3648 bp Gene: pfam01930:cas4 Type: Type-I Location: 3663-4214 bp Gene: cd09722:cas1 Type: universal Location: 4217-5197 bp Gene: cd09725:cas2 Type: universal Location: 5200-5466 bp CRISPR array Location: 5650-7135 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 5650-7135 bp Num of repeats: 23 Spacers: s1-s22 Gene: unk Type: unknown Location: 5666-5833 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 6055-6288 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5650-7135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWA01000147.1 Clostridioides difficile FD262 DNA, sequence147, whole genome shotgun sequence

⇒Summary: seq-len = 9639 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2011-3096 bp Zoom in on locus 1 x17 CRISPR array Location: 2011-3096 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 2011-3096 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2011-3096 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWA01000154.1 Clostridioides difficile FD262 DNA, sequence154, whole genome shotgun sequence

⇒Summary: seq-len = 9039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 477-1431 bp Zoom in on locus 1 x15 CRISPR array Location: 477-1431 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 477-1431 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 477-1431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWA01000123.1 Clostridioides difficile FD262 DNA, sequence123, whole genome shotgun sequence

⇒Summary: seq-len = 12145 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5844-6137 bp Zoom in on locus 1 x5 CRISPR array Location: 5844-6137 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5844-6137 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5844-6137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWA01000249.1 Clostridioides difficile FD262 DNA, sequence249, whole genome shotgun sequence

⇒Summary: seq-len = 2785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-545 bp Zoom in on locus 1 x9 CRISPR array Location: 0-545 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 0-545 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWA01000197.1 Clostridioides difficile FD262 DNA, sequence197, whole genome shotgun sequence

⇒Summary: seq-len = 5902 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 371-5900 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 371-706 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 711-2186 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2206-3219 bp Gene: cd09693:cas5 Type: Type-I Location: 3235-4041 bp Gene: cd09641:cas3HD Type: Type-I Location: 4068-5900 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWA01000018.1 Clostridioides difficile FD262 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 38801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11601-12220 bp Zoom in on locus 1 x10 CRISPR array Location: 11601-12220 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 11601-12220 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11601-12220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWA01000212.1 Clostridioides difficile FD262 DNA, sequence212, whole genome shotgun sequence

⇒Summary: seq-len = 5255 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1074-1168 bp Zoom in on locus 1 x2 CRISPR array Location: 1074-1168 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1074-1168 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1074-1168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWA01000020.1 Clostridioides difficile FD262 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 38488 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20514-23024 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 20514-20803 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 20514-20803 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 22668-23024 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 22668-23024 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20514-20803 bp]: array | spacers
           [Locus range 22668-23024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIWA01000060.1 Clostridioides difficile FD262 DNA, sequence060, whole genome shotgun sequence

⇒Summary: seq-len = 19765 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16565-19763 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 16565-17452 bp Gene: pfam01881:cas6 Type: other Location: 17530-18267 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 18273-19763 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)