CRISPRone

CRISPRone report for GCA_004318485.1_ASM431848v1

♦ Seq 1: BIWB01000020.1 Clostridioides difficile FD263 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 29873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5394-5684 bp Zoom in on locus 1 x5 CRISPR array Location: 5394-5684 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5394-5684 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5394-5684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWB01000225.1 Clostridioides difficile FD263 DNA, sequence225, whole genome shotgun sequence

⇒Summary: seq-len = 5161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3527-4081 bp Zoom in on locus 1 x9 CRISPR array Location: 3527-4081 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3527-4081 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3527-4081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWB01000152.1 Clostridioides difficile FD263 DNA, sequence152, whole genome shotgun sequence

⇒Summary: seq-len = 9549 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7042-9548 bp Zoom in on locus 1 x26 CRISPR array Location: 7042-8718 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 7042-8718 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 8902-9168 bp Gene: cd09634:cas1 Type: universal Location: 9171-9548 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7042-8718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWB01000208.1 Clostridioides difficile FD263 DNA, sequence208, whole genome shotgun sequence

⇒Summary: seq-len = 5843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2820-3048 bp Zoom in on locus 1 x4 CRISPR array Location: 2820-3048 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2820-3048 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2820-3048 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWB01000171.1 Clostridioides difficile FD263 DNA, sequence171, whole genome shotgun sequence

⇒Summary: seq-len = 7735 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4878-5301 bp Zoom in on locus 1 x7 CRISPR array Location: 4878-5301 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4878-5301 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4878-5301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWB01000032.1 Clostridioides difficile FD263 DNA, sequence032, whole genome shotgun sequence

⇒Summary: seq-len = 25792 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5901-11704 bp Zoom in on locus 1 x6 x5 x2 CRISPR array Location: 5901-6262 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5901-6262 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8905-9198 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 8905-9198 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 11609-11704 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 11609-11704 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5901-6262 bp]: array | spacers
           [Locus range 8905-9198 bp]: array | spacers
           [Locus range 11609-11704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWB01000161.1 Clostridioides difficile FD263 DNA, sequence161, whole genome shotgun sequence

⇒Summary: seq-len = 8432 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59-8430 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 59-883 bp Gene: pfam01881:cas6 Type: other Location: 961-1698 bp Gene: unk Type: unknown Location: 1704-2210 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2268-3554 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3556-4470 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4472-5173 bp Gene: cd09641:cas3HD Type: Type-I Location: 5184-7505 bp Gene: pfam01930:cas4 Type: Type-I Location: 7520-8071 bp Gene: COG1518:cas1 Type: universal Location: 8074-8430 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWB01000157.1 Clostridioides difficile FD263 DNA, sequence157, whole genome shotgun sequence

⇒Summary: seq-len = 8902 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8820-8915 bp Zoom in on locus 1 x2 CRISPR array Location: 8820-8915 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8820-8915 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8820-8915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWB01000226.1 Clostridioides difficile FD263 DNA, sequence226, whole genome shotgun sequence

⇒Summary: seq-len = 5112 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328-4589 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 328-2736 bp Gene: cd09693:cas5 Type: Type-I Location: 2763-3560 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3576-4589 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWB01000310.1 Clostridioides difficile FD263 DNA, sequence310, whole genome shotgun sequence

⇒Summary: seq-len = 3020 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-93 bp Zoom in on locus 1 x2 CRISPR array Location: 0-93 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-93 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-93 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIWB01000230.1 Clostridioides difficile FD263 DNA, sequence230, whole genome shotgun sequence

⇒Summary: seq-len = 4928 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4651-4938 bp Zoom in on locus 1 x5 CRISPR array Location: 4651-4938 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4651-4938 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4651-4938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)