CRISPRone

CRISPRone report for GCA_004318505.1_ASM431850v1

♦ Seq 1: BIWC01000233.1 Clostridioides difficile FD264 DNA, sequence233, whole genome shotgun sequence

⇒Summary: seq-len = 5530 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-218 bp Zoom in on locus 1 x4 CRISPR array Location: 0-218 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-218 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWC01000405.1 Clostridioides difficile FD264 DNA, sequence405, whole genome shotgun sequence

⇒Summary: seq-len = 1124 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1091 bp Zoom in on locus 1 Gene: COG1518:cas1 Type: universal Location: 1-519 bp Gene: pfam01930:cas4 Type: Type-I Location: 522-1091 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWC01000140.1 Clostridioides difficile FD264 DNA, sequence140, whole genome shotgun sequence

⇒Summary: seq-len = 10383 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-3229 bp Zoom in on locus 1 x4 x6 CRISPR array Location: 0-225 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-225 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2869-3229 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 2869-3229 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-225 bp]: array | spacers
           [Locus range 2869-3229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWC01000035.1 Clostridioides difficile FD264 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 25191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19650-19940 bp Zoom in on locus 1 x5 CRISPR array Location: 19650-19940 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 19650-19940 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19650-19940 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWC01000394.1 Clostridioides difficile FD264 DNA, sequence394, whole genome shotgun sequence

⇒Summary: seq-len = 1254 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1192 bp Zoom in on locus 1 x6 Gene: cd09634:cas1 Type: universal Location: 3-380 bp Gene: cd09725:cas2 Type: universal Location: 383-649 bp CRISPR array Location: 833-1192 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 833-1192 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 833-1192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWC01000047.1 Clostridioides difficile FD264 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 21355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 779-1006 bp Zoom in on locus 1 x4 CRISPR array Location: 779-1006 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 779-1006 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 779-1006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWC01000108.1 Clostridioides difficile FD264 DNA, sequence108, whole genome shotgun sequence

⇒Summary: seq-len = 13028 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3509-13025 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 3509-5917 bp Gene: cd09693:cas5 Type: Type-I Location: 5944-6741 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 6757-7770 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 7790-9265 bp Gene: pfam01881:cas6 Type: other Location: 9270-10007 bp Gene: unk Type: unknown Location: 10321-10779 bp Gene: cas14:cas14 Type: Type-V Location: 10807-11979 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12132-13025 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWC01000402.1 Clostridioides difficile FD264 DNA, sequence402, whole genome shotgun sequence

⇒Summary: seq-len = 1133 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1145 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1145 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1145 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWC01000292.1 Clostridioides difficile FD264 DNA, sequence292, whole genome shotgun sequence

⇒Summary: seq-len = 3495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2358-3506 bp Zoom in on locus 1 x18 CRISPR array Location: 2358-3506 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2358-3506 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2358-3506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWC01000037.1 Clostridioides difficile FD264 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 24263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-160 bp Zoom in on locus 1 x3 CRISPR array Location: 1-160 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-160 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIWC01000077.1 Clostridioides difficile FD264 DNA, sequence077, whole genome shotgun sequence

⇒Summary: seq-len = 16548 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2438-2533 bp Zoom in on locus 1 x2 CRISPR array Location: 2438-2533 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2438-2533 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2438-2533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIWC01000106.1 Clostridioides difficile FD264 DNA, sequence106, whole genome shotgun sequence

⇒Summary: seq-len = 13049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5068-5490 bp Zoom in on locus 1 x7 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5068-5490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIWC01000259.1 Clostridioides difficile FD264 DNA, sequence259, whole genome shotgun sequence

⇒Summary: seq-len = 4537 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71-4534 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 71-2392 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2403-3104 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3106-4020 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 4022-4534 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)