CRISPRone

CRISPRone report for GCA_004318545.1_ASM431854v1

♦ Seq 1: BIWE01000147.1 Clostridioides difficile FD266 DNA, sequence147, whole genome shotgun sequence

⇒Summary: seq-len = 8914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2512-3136 bp Zoom in on locus 1 x10 CRISPR array Location: 2512-3136 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2512-3136 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2512-3136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWE01000257.1 Clostridioides difficile FD266 DNA, sequence257, whole genome shotgun sequence

⇒Summary: seq-len = 5089 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-219 bp Zoom in on locus 1 x4 CRISPR array Location: 0-219 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-219 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWE01000360.1 Clostridioides difficile FD266 DNA, sequence360, whole genome shotgun sequence

⇒Summary: seq-len = 2751 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2749 bp Zoom in on locus 1 x23 CRISPR array Location: 0-1471 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 0-1471 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam01930:cas4 Type: Type-I Location: 1555-2049 bp Gene: cd09634:cas1 Type: universal Location: 2075-2749 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWE01000165.1 Clostridioides difficile FD266 DNA, sequence165, whole genome shotgun sequence

⇒Summary: seq-len = 8388 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 602-895 bp Zoom in on locus 1 x5 CRISPR array Location: 602-895 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 602-895 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 602-895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWE01000202.1 Clostridioides difficile FD266 DNA, sequence202, whole genome shotgun sequence

⇒Summary: seq-len = 6829 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5375-5736 bp Zoom in on locus 1 x6 CRISPR array Location: 5375-5736 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5375-5736 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5375-5736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWE01000302.1 Clostridioides difficile FD266 DNA, sequence302, whole genome shotgun sequence

⇒Summary: seq-len = 3915 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2848-3010 bp Zoom in on locus 1 x3 CRISPR array Location: 2848-3010 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2848-3010 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2848-3010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWE01000020.1 Clostridioides difficile FD266 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 24050 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21119-24048 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 21119-23527 bp Gene: cd09693:cas5 Type: Type-I Location: 23554-24048 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWE01000376.1 Clostridioides difficile FD266 DNA, sequence376, whole genome shotgun sequence

⇒Summary: seq-len = 2464 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2463 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-823 bp Gene: pfam05107:cas7b Type: Type-I Location: 816-1805 bp Gene: cd09693:cas5 Type: Type-I Location: 1807-2463 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWE01000400.1 Clostridioides difficile FD266 DNA, sequence400, whole genome shotgun sequence

⇒Summary: seq-len = 2025 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1466 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 3-437 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 453-1466 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWE01000164.1 Clostridioides difficile FD266 DNA, sequence164, whole genome shotgun sequence

⇒Summary: seq-len = 8430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4711-5132 bp Zoom in on locus 1 x7 CRISPR array Location: 4711-5132 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4711-5132 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4711-5132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIWE01000446.1 Clostridioides difficile FD266 DNA, sequence446, whole genome shotgun sequence

⇒Summary: seq-len = 1499 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1495 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 3-599 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 611-1495 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)