CRISPRone

CRISPRone report for GCA_004318565.1_ASM431856v1

♦ Seq 1: BIWF01000348.1 Clostridioides difficile FD267 DNA, sequence348, whole genome shotgun sequence

⇒Summary: seq-len = 2148 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242-2145 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 242-982 bp Gene: pfam05107:cas7b Type: Type-I Location: 984-1973 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1966-2145 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWF01000142.1 Clostridioides difficile FD267 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 9110 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-9125 bp Zoom in on locus 1 x33 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2-1051 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1053-1967 bp Gene: cd09693:cas5 Type: Type-I Location: 1969-2670 bp Gene: COG1203:cas3 Type: Type-I Location: 2681-5002 bp Gene: pfam01930:cas4 Type: Type-I Location: 5017-5568 bp Gene: cd09722:cas1 Type: universal Location: 5571-6551 bp Gene: cd09725:cas2 Type: universal Location: 6554-6820 bp CRISPR array Location: 7004-9125 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 7004-9125 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7004-9125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWF01000178.1 Clostridioides difficile FD267 DNA, sequence178, whole genome shotgun sequence

⇒Summary: seq-len = 7050 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3780-5824 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 3780-4157 bp Gene: cd09718:cas1 Type: universal Location: 4169-5824 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWF01000364.1 Clostridioides difficile FD267 DNA, sequence364, whole genome shotgun sequence

⇒Summary: seq-len = 1974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-215 bp Zoom in on locus 1 x4 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-215 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWF01000266.1 Clostridioides difficile FD267 DNA, sequence266, whole genome shotgun sequence

⇒Summary: seq-len = 3903 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3902 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-846 bp Gene: cd09693:cas5 Type: Type-I Location: 873-1670 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1686-2699 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2718-3902 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWF01000427.1 Clostridioides difficile FD267 DNA, sequence427, whole genome shotgun sequence

⇒Summary: seq-len = 1066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1067 bp Zoom in on locus 1 x17 CRISPR array Location: 0-1067 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-1067 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWF01000021.1 Clostridioides difficile FD267 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 25014 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3617-4243 bp Zoom in on locus 1 x10 CRISPR array Location: 3617-4243 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3617-4243 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3617-4243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWF01000421.1 Clostridioides difficile FD267 DNA, sequence421, whole genome shotgun sequence

⇒Summary: seq-len = 1124 bp; # of CRISPR array = 0; # of cas gene = 1  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1123 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-1123 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWF01000390.1 Clostridioides difficile FD267 DNA, sequence390, whole genome shotgun sequence

⇒Summary: seq-len = 1546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 341-1556 bp Zoom in on locus 1 x19 CRISPR array Location: 341-1556 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 341-1556 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 341-1556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)