CRISPRone

CRISPRone report for GCA_004318605.1_ASM431860v1

♦ Seq 1: BIWH01000357.1 Clostridioides difficile FD269 DNA, sequence357, whole genome shotgun sequence

⇒Summary: seq-len = 2372 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-2203 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 3-575 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 586-1287 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1289-2203 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWH01000420.1 Clostridioides difficile FD269 DNA, sequence420, whole genome shotgun sequence

⇒Summary: seq-len = 1311 bp; # of CRISPR array = 0; # of cas gene = 1  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1310 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 3-1310 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWH01000165.1 Clostridioides difficile FD269 DNA, sequence165, whole genome shotgun sequence

⇒Summary: seq-len = 8248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-6231 bp Zoom in on locus 1 x18 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-6231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWH01000405.1 Clostridioides difficile FD269 DNA, sequence405, whole genome shotgun sequence

⇒Summary: seq-len = 1536 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1257-1551 bp Zoom in on locus 1 x5 CRISPR array Location: 1257-1551 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1257-1551 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1257-1551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWH01000071.1 Clostridioides difficile FD269 DNA, sequence071, whole genome shotgun sequence

⇒Summary: seq-len = 16318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11729-13269 bp Zoom in on locus 1 x24 CRISPR array Location: 11729-13269 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 11729-13269 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11729-13269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWH01000360.1 Clostridioides difficile FD269 DNA, sequence360, whole genome shotgun sequence

⇒Summary: seq-len = 2308 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-415 bp Zoom in on locus 1 x7 CRISPR array Location: 0-415 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-415 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWH01000221.1 Clostridioides difficile FD269 DNA, sequence221, whole genome shotgun sequence

⇒Summary: seq-len = 6039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-689 bp Zoom in on locus 1 x11 CRISPR array Location: 0-689 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 0-689 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWH01000398.1 Clostridioides difficile FD269 DNA, sequence398, whole genome shotgun sequence

⇒Summary: seq-len = 1625 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498-1624 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 498-1145 bp Gene: cd09759:cas6 Type: Subtype-I-A Location: 1136-1624 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWH01000028.1 Clostridioides difficile FD269 DNA, sequence028, whole genome shotgun sequence

⇒Summary: seq-len = 25145 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20567-24828 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 20567-22975 bp Gene: cd09693:cas5 Type: Type-I Location: 23002-23799 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23815-24828 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWH01000001.1 Clostridioides difficile FD269 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 44062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22017-22241 bp Zoom in on locus 1 x4 CRISPR array Location: 22017-22241 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 22017-22241 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22017-22241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIWH01000231.1 Clostridioides difficile FD269 DNA, sequence231, whole genome shotgun sequence

⇒Summary: seq-len = 5641 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-5619 bp Zoom in on locus 1 x26 Gene: COG1203:cas3 Type: Type-I Location: 3-1937 bp Gene: pfam01930:cas4 Type: Type-I Location: 1952-2503 bp Gene: cd09722:cas1 Type: universal Location: 2506-3486 bp Gene: cd09725:cas2 Type: universal Location: 3489-3755 bp CRISPR array Location: 3939-5619 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 3939-5619 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3939-5619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIWH01000292.1 Clostridioides difficile FD269 DNA, sequence292, whole genome shotgun sequence

⇒Summary: seq-len = 3844 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2296-3348 bp Zoom in on locus 1 x11 x3 CRISPR array Location: 2296-2983 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2296-2983 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 3188-3348 bp Num of repeats: 3 Spacers: s11-s12 CRISPR array Location: 3188-3348 bp Num of repeats: 3 Spacers: s11-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2296-2983 bp]: array | spacers
           [Locus range 3188-3348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIWH01000178.1 Clostridioides difficile FD269 DNA, sequence178, whole genome shotgun sequence

⇒Summary: seq-len = 7604 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-5816 bp Zoom in on locus 1 x13 Gene: pfam01881:cas6 Type: other Location: 3-200 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 202-1350 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1371-2441 bp Gene: COG1203:cas3 Type: Type-I Location: 2452-4434 bp CRISPR array Location: 5000-5816 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5000-5816 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5000-5816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)