CRISPRone

CRISPRone report for GCA_004318705.1_ASM431870v1

♦ Seq 1: BIWM01000191.1 Clostridioides difficile FD274 DNA, sequence191, whole genome shotgun sequence

⇒Summary: seq-len = 6577 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6578 bp Zoom in on locus 1 x4 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-399 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 401-1315 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1317-2018 bp Gene: COG1203:cas3 Type: Type-I Location: 2029-4350 bp Gene: pfam01930:cas4 Type: Type-I Location: 4365-4916 bp Gene: cd09722:cas1 Type: universal Location: 4919-5899 bp Gene: cd09725:cas2 Type: universal Location: 5902-6168 bp CRISPR array Location: 6352-6578 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6352-6578 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6352-6578 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWM01000510.1 Clostridioides difficile FD274 DNA, sequence510, whole genome shotgun sequence

⇒Summary: seq-len = 1026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 613-1036 bp Zoom in on locus 1 x7 CRISPR array Location: 613-1036 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 613-1036 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 613-1036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWM01000418.1 Clostridioides difficile FD274 DNA, sequence418, whole genome shotgun sequence

⇒Summary: seq-len = 1991 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-880 bp Zoom in on locus 1 x14 CRISPR array Location: 0-880 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-880 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWM01000014.1 Clostridioides difficile FD274 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 30164 bp; # of CRISPR array = 0; # of cas gene = 4  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7886-15123 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 7886-9751 bp Gene: unk Type: unknown Location: 9873-10217 bp Gene: unk Type: unknown Location: 10377-10631 bp Gene: pfam00078:RT Type: other Location: 10837-12633 bp Gene: unk Type: unknown Location: 12640-12858 bp Gene: unk Type: unknown Location: 12883-13776 bp Gene: COG1332:csm5gr7 Type: Subtype-III-A Location: 13888-14499 bp Gene: mkCas0151:cas8b10 Type: Subtype-I-B Location: 14563-15123 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWM01000193.1 Clostridioides difficile FD274 DNA, sequence193, whole genome shotgun sequence

⇒Summary: seq-len = 6527 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3133-6365 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 3133-5541 bp Gene: cd09693:cas5 Type: Type-I Location: 5568-6365 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWM01000304.1 Clostridioides difficile FD274 DNA, sequence304, whole genome shotgun sequence

⇒Summary: seq-len = 4088 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3304-3531 bp Zoom in on locus 1 x4 CRISPR array Location: 3304-3531 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3304-3531 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3304-3531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWM01000427.1 Clostridioides difficile FD274 DNA, sequence427, whole genome shotgun sequence

⇒Summary: seq-len = 1891 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 184-413 bp Zoom in on locus 1 x4 CRISPR array Location: 184-413 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 184-413 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 184-413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWM01000034.1 Clostridioides difficile FD274 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 22000 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18773-21998 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 18773-19687 bp Gene: pfam01881:cas6 Type: other Location: 19708-20502 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 20508-21998 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWM01000015.1 Clostridioides difficile FD274 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 29558 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10383-10477 bp Zoom in on locus 1 x2 CRISPR array Location: 10383-10477 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 10383-10477 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10383-10477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)