CRISPRone

CRISPRone report for GCA_004318925.1_ASM431892v1

♦ Seq 1: BIWX01000305.1 Clostridioides difficile FD285 DNA, sequence305, whole genome shotgun sequence

⇒Summary: seq-len = 3358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290-847 bp Zoom in on locus 1 x9 CRISPR array Location: 290-847 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 290-847 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 290-847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWX01000240.1 Clostridioides difficile FD285 DNA, sequence240, whole genome shotgun sequence

⇒Summary: seq-len = 5521 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5376-5538 bp Zoom in on locus 1 x3 CRISPR array Location: 5376-5538 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5376-5538 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5376-5538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWX01000317.1 Clostridioides difficile FD285 DNA, sequence317, whole genome shotgun sequence

⇒Summary: seq-len = 3025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2132-2424 bp Zoom in on locus 1 x5 CRISPR array Location: 2132-2424 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2132-2424 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2132-2424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWX01000384.1 Clostridioides difficile FD285 DNA, sequence384, whole genome shotgun sequence

⇒Summary: seq-len = 1428 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196-1426 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 196-936 bp Gene: pfam05107:cas7b Type: Type-I Location: 938-1426 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWX01000314.1 Clostridioides difficile FD285 DNA, sequence314, whole genome shotgun sequence

⇒Summary: seq-len = 3067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 907-1068 bp Zoom in on locus 1 x3 CRISPR array Location: 907-1068 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 907-1068 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 907-1068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWX01000315.1 Clostridioides difficile FD285 DNA, sequence315, whole genome shotgun sequence

⇒Summary: seq-len = 3066 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3064 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 751-1764 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1784-3064 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWX01000337.1 Clostridioides difficile FD285 DNA, sequence337, whole genome shotgun sequence

⇒Summary: seq-len = 2552 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2404-2564 bp Zoom in on locus 1 x3 CRISPR array Location: 2404-2564 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2404-2564 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2404-2564 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIWX01000117.1 Clostridioides difficile FD285 DNA, sequence117, whole genome shotgun sequence

⇒Summary: seq-len = 10897 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5783-10897 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 5783-6073 bp Gene: cd09722:cas1 Type: universal Location: 6284-7291 bp Gene: pfam01930:cas4 Type: Type-I Location: 7317-7811 bp CRISPR array Location: 7896-10897 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 7896-10897 bp Num of repeats: 46 Spacers: s1-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7896-10897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIWX01000142.1 Clostridioides difficile FD285 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 9089 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8122-8873 bp Zoom in on locus 1 x12 CRISPR array Location: 8122-8873 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8122-8873 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8122-8873 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIWX01000202.1 Clostridioides difficile FD285 DNA, sequence202, whole genome shotgun sequence

⇒Summary: seq-len = 6414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5758-6178 bp Zoom in on locus 1 x7 CRISPR array Location: 5758-6178 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5758-6178 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5758-6178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)