CRISPRone

CRISPRone report for GCA_004318965.1_ASM431896v1

♦ Seq 1: BIWZ01000003.1 Clostridioides difficile FD287 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 60963 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34640-34866 bp Zoom in on locus 1 x4 CRISPR array Location: 34640-34866 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 34640-34866 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34640-34866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIWZ01000044.1 Clostridioides difficile FD287 DNA, sequence044, whole genome shotgun sequence

⇒Summary: seq-len = 25573 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6166 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 1-402 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 407-1882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1902-2918 bp Gene: cd09693:cas5 Type: Type-I Location: 2934-3731 bp Gene: cd09641:cas3HD Type: Type-I Location: 3758-6166 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIWZ01000013.1 Clostridioides difficile FD287 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 41328 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19612-23681 bp Zoom in on locus 1 x6 x8 CRISPR array Location: 19612-19970 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 19612-19970 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 23194-23681 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 23194-23681 bp Num of repeats: 8 Spacers: s6-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19612-19970 bp]: array | spacers
           [Locus range 23194-23681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIWZ01000039.1 Clostridioides difficile FD287 DNA, sequence039, whole genome shotgun sequence

⇒Summary: seq-len = 27877 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14940-25824 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 14940-15827 bp Gene: pfam01881:cas6 Type: other Location: 15905-16642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16648-18525 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18527-19441 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19443-20144 bp Gene: cd09641:cas3HD Type: Type-I Location: 20155-22476 bp Gene: pfam01930:cas4 Type: Type-I Location: 22491-23042 bp Gene: cd09722:cas1 Type: universal Location: 23045-24025 bp Gene: cd09725:cas2 Type: universal Location: 24028-24294 bp CRISPR array Location: 24478-25824 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 24478-25824 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24478-25824 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIWZ01000181.1 Clostridioides difficile FD287 DNA, sequence181, whole genome shotgun sequence

⇒Summary: seq-len = 6737 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5602-6291 bp Zoom in on locus 1 x11 CRISPR array Location: 5602-6291 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 5602-6291 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5602-6291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIWZ01000159.1 Clostridioides difficile FD287 DNA, sequence159, whole genome shotgun sequence

⇒Summary: seq-len = 7785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6222-6711 bp Zoom in on locus 1 x8 CRISPR array Location: 6222-6711 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6222-6711 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6222-6711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIWZ01000142.1 Clostridioides difficile FD287 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 9495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5278-5772 bp Zoom in on locus 1 x8 CRISPR array Location: 5278-5772 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5278-5772 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5278-5772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)