CRISPRone

CRISPRone report for GCA_004319005.1_ASM431900v1

♦ Seq 1: BIXB01000388.1 Clostridioides difficile FD289 DNA, sequence388, whole genome shotgun sequence

⇒Summary: seq-len = 1290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 546-1300 bp Zoom in on locus 1 x12 CRISPR array Location: 546-1300 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 546-1300 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 546-1300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXB01000208.1 Clostridioides difficile FD289 DNA, sequence208, whole genome shotgun sequence

⇒Summary: seq-len = 6302 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6318 bp Zoom in on locus 1 x3 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3-203 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 205-1119 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1121-1822 bp Gene: cd09641:cas3HD Type: Type-I Location: 1833-4154 bp Gene: pfam01930:cas4 Type: Type-I Location: 4169-4720 bp Gene: cd09722:cas1 Type: universal Location: 4723-5703 bp Gene: cd09725:cas2 Type: universal Location: 5706-5972 bp CRISPR array Location: 6156-6318 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6156-6318 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6156-6318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXB01000318.1 Clostridioides difficile FD289 DNA, sequence318, whole genome shotgun sequence

⇒Summary: seq-len = 2832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-288 bp Zoom in on locus 1 x5 CRISPR array Location: 0-288 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-288 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXB01000362.1 Clostridioides difficile FD289 DNA, sequence362, whole genome shotgun sequence

⇒Summary: seq-len = 1681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1041-1268 bp Zoom in on locus 1 x4 CRISPR array Location: 1041-1268 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1041-1268 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1041-1268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXB01000058.1 Clostridioides difficile FD289 DNA, sequence058, whole genome shotgun sequence

⇒Summary: seq-len = 19169 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16407-16768 bp Zoom in on locus 1 x6 CRISPR array Location: 16407-16768 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 16407-16768 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16407-16768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXB01000341.1 Clostridioides difficile FD289 DNA, sequence341, whole genome shotgun sequence

⇒Summary: seq-len = 2216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1869-2162 bp Zoom in on locus 1 x5 CRISPR array Location: 1869-2162 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1869-2162 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1869-2162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXB01000274.1 Clostridioides difficile FD289 DNA, sequence274, whole genome shotgun sequence

⇒Summary: seq-len = 4137 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4135 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-384 bp Gene: cd09693:cas5 Type: Type-I Location: 411-1208 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1224-2237 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2257-3732 bp Gene: pfam01881:cas6 Type: other Location: 3737-4135 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXB01000314.1 Clostridioides difficile FD289 DNA, sequence314, whole genome shotgun sequence

⇒Summary: seq-len = 2895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-953 bp Zoom in on locus 1 x15 CRISPR array Location: 0-953 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-953 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXB01000209.1 Clostridioides difficile FD289 DNA, sequence209, whole genome shotgun sequence

⇒Summary: seq-len = 6299 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2893-3377 bp Zoom in on locus 1 x8 CRISPR array Location: 2893-3377 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2893-3377 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2893-3377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXB01000026.1 Clostridioides difficile FD289 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 26839 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65-354 bp Zoom in on locus 1 x5 CRISPR array Location: 65-354 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 65-354 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65-354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXB01000299.1 Clostridioides difficile FD289 DNA, sequence299, whole genome shotgun sequence

⇒Summary: seq-len = 3547 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3319 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 1-1020 bp Gene: unk Type: unknown Location: 1078-1584 bp Gene: pfam01881:cas6 Type: other Location: 1590-2384 bp Gene: pfam13280:WYL Type: other Location: 2405-3319 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIXB01000139.1 Clostridioides difficile FD289 DNA, sequence139, whole genome shotgun sequence

⇒Summary: seq-len = 10254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5068-5490 bp Zoom in on locus 1 x7 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5068-5490 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5068-5490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIXB01000022.1 Clostridioides difficile FD289 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 29544 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11867-12294 bp Zoom in on locus 1 x7 CRISPR array Location: 11867-12294 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11867-12294 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11867-12294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)