CRISPRone

CRISPRone report for GCA_004319065.1_ASM431906v1

♦ Seq 1: BIXE01000043.1 Clostridioides difficile FD293 DNA, sequence043, whole genome shotgun sequence

⇒Summary: seq-len = 28371 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25026-25509 bp Zoom in on locus 1 x8 CRISPR array Location: 25026-25509 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 25026-25509 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25026-25509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXE01000071.1 Clostridioides difficile FD293 DNA, sequence071, whole genome shotgun sequence

⇒Summary: seq-len = 19039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-877 bp Zoom in on locus 1 x14 CRISPR array Location: 0-877 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-877 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXE01000079.1 Clostridioides difficile FD293 DNA, sequence079, whole genome shotgun sequence

⇒Summary: seq-len = 17688 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55-150 bp Zoom in on locus 1 x2 CRISPR array Location: 55-150 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 55-150 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55-150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXE01000014.1 Clostridioides difficile FD293 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 59756 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24960-25249 bp Zoom in on locus 1 x5 CRISPR array Location: 24960-25249 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24960-25249 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24960-25249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXE01000121.1 Clostridioides difficile FD293 DNA, sequence121, whole genome shotgun sequence

⇒Summary: seq-len = 10187 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-9821 bp Zoom in on locus 1 x5 CRISPR array Location: 0-283 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-283 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 467-733 bp Gene: cd09722:cas1 Type: universal Location: 736-1716 bp Gene: pfam01930:cas4 Type: Type-I Location: 1719-2237 bp Gene: cd09641:cas3HD Type: Type-I Location: 2285-4606 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4617-5318 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5320-6234 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 6236-7522 bp Gene: unk Type: unknown Location: 7580-8086 bp Gene: pfam01881:cas6 Type: other Location: 8092-8886 bp Gene: pfam13280:WYL Type: other Location: 8907-9821 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXE01000128.1 Clostridioides difficile FD293 DNA, sequence128, whole genome shotgun sequence

⇒Summary: seq-len = 9558 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3818-4046 bp Zoom in on locus 1 x4 CRISPR array Location: 3818-4046 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3818-4046 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3818-4046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXE01000020.1 Clostridioides difficile FD293 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 48319 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20888-21181 bp 2 Locus 2: 45091-48322 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x4 CRISPR array Location: 20888-21181 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 20888-21181 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45091-45452 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 45091-45452 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 48095-48322 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 48095-48322 bp Num of repeats: 4 Spacers: s10-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20888-21181 bp]: array | spacers
           [Locus range 45091-45452 bp]: array | spacers
           [Locus range 48095-48322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXE01000090.1 Clostridioides difficile FD293 DNA, sequence090, whole genome shotgun sequence

⇒Summary: seq-len = 14848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3810-4373 bp Zoom in on locus 1 x9 CRISPR array Location: 3810-4373 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3810-4373 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3810-4373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXE01000166.1 Clostridioides difficile FD293 DNA, sequence166, whole genome shotgun sequence

⇒Summary: seq-len = 5396 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1202 bp Zoom in on locus 1 x19 CRISPR array Location: 0-1202 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 0-1202 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXE01000105.1 Clostridioides difficile FD293 DNA, sequence105, whole genome shotgun sequence

⇒Summary: seq-len = 13128 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12649-13140 bp Zoom in on locus 1 x8 CRISPR array Location: 12649-13140 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 12649-13140 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12649-13140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXE01000001.1 Clostridioides difficile FD293 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 121791 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71127-80859 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 71127-72236 bp Gene: cas14:cas14 Type: Type-V Location: 72389-73561 bp Gene: unk Type: unknown Location: 73589-74047 bp Gene: pfam01881:cas6 Type: other Location: 74361-75098 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 75103-76578 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76598-77611 bp Gene: cd09693:cas5 Type: Type-I Location: 77627-78424 bp Gene: cd09641:cas3HD Type: Type-I Location: 78451-80859 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)