CRISPRone

CRISPRone report for GCA_004319105.1_ASM431910v1

♦ Seq 1: BIXG01000159.1 Clostridioides difficile FD295 DNA, sequence159, whole genome shotgun sequence

⇒Summary: seq-len = 8499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2768-2930 bp Zoom in on locus 1 x3 CRISPR array Location: 2768-2930 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2768-2930 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2768-2930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXG01000323.1 Clostridioides difficile FD295 DNA, sequence323, whole genome shotgun sequence

⇒Summary: seq-len = 2157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1011 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1011 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1011 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXG01000107.1 Clostridioides difficile FD295 DNA, sequence107, whole genome shotgun sequence

⇒Summary: seq-len = 12468 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6307-12466 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 6307-8715 bp Gene: cd09693:cas5 Type: Type-I Location: 8742-9539 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9555-10568 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10588-12063 bp Gene: pfam01881:cas6 Type: other Location: 12068-12466 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXG01000381.1 Clostridioides difficile FD295 DNA, sequence381, whole genome shotgun sequence

⇒Summary: seq-len = 1065 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1062 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 2-526 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 538-1062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXG01000156.1 Clostridioides difficile FD295 DNA, sequence156, whole genome shotgun sequence

⇒Summary: seq-len = 8717 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2826-3053 bp Zoom in on locus 1 x4 CRISPR array Location: 2826-3053 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2826-3053 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2826-3053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXG01000286.1 Clostridioides difficile FD295 DNA, sequence286, whole genome shotgun sequence

⇒Summary: seq-len = 3130 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2888 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-1164 bp Gene: pfam05107:cas7b Type: Type-I Location: 1157-2146 bp Gene: cd09693:cas5 Type: Type-I Location: 2148-2888 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXG01000148.1 Clostridioides difficile FD295 DNA, sequence148, whole genome shotgun sequence

⇒Summary: seq-len = 9364 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5782-9376 bp Zoom in on locus 1 x23 Gene: cd09725:cas2 Type: universal Location: 5782-6072 bp Gene: cd09722:cas1 Type: universal Location: 6283-7290 bp Gene: pfam01930:cas4 Type: Type-I Location: 7316-7810 bp CRISPR array Location: 7895-9376 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 7895-9376 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7895-9376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXG01000199.1 Clostridioides difficile FD295 DNA, sequence199, whole genome shotgun sequence

⇒Summary: seq-len = 6546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1179-1471 bp Zoom in on locus 1 x5 CRISPR array Location: 1179-1471 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1179-1471 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1179-1471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXG01000093.1 Clostridioides difficile FD295 DNA, sequence093, whole genome shotgun sequence

⇒Summary: seq-len = 14181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3912-4469 bp Zoom in on locus 1 x9 CRISPR array Location: 3912-4469 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3912-4469 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3912-4469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXG01000176.1 Clostridioides difficile FD295 DNA, sequence176, whole genome shotgun sequence

⇒Summary: seq-len = 7569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1736-2157 bp Zoom in on locus 1 x7 CRISPR array Location: 1736-2157 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1736-2157 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1736-2157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXG01000215.1 Clostridioides difficile FD295 DNA, sequence215, whole genome shotgun sequence

⇒Summary: seq-len = 5735 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5376-5737 bp Zoom in on locus 1 x6 CRISPR array Location: 5376-5737 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5376-5737 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5376-5737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIXG01000227.1 Clostridioides difficile FD295 DNA, sequence227, whole genome shotgun sequence

⇒Summary: seq-len = 5196 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4717-5207 bp Zoom in on locus 1 x8 CRISPR array Location: 4717-5207 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4717-5207 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4717-5207 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)