CRISPRone

CRISPRone report for GCA_004319165.1_ASM431916v1

♦ Seq 1: BIXJ01000030.1 Clostridioides difficile FD299 DNA, sequence030, whole genome shotgun sequence

⇒Summary: seq-len = 24316 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6470 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 2-709 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 714-2189 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2209-3222 bp Gene: cd09693:cas5 Type: Type-I Location: 3238-4035 bp Gene: cd09641:cas3HD Type: Type-I Location: 4062-6470 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXJ01000211.1 Clostridioides difficile FD299 DNA, sequence211, whole genome shotgun sequence

⇒Summary: seq-len = 6066 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79-6063 bp Zoom in on locus 1 x46 Gene: cd09722:cas1 Type: universal Location: 79-1086 bp Gene: pfam01930:cas4 Type: Type-I Location: 1112-1606 bp CRISPR array Location: 1691-4692 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 1691-4692 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09639:cas3 Type: Type-I Location: 4882-6063 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1691-4692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXJ01000275.1 Clostridioides difficile FD299 DNA, sequence275, whole genome shotgun sequence

⇒Summary: seq-len = 3846 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2512-3070 bp Zoom in on locus 1 x9 CRISPR array Location: 2512-3070 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2512-3070 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2512-3070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXJ01000093.1 Clostridioides difficile FD299 DNA, sequence093, whole genome shotgun sequence

⇒Summary: seq-len = 13698 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1928-2090 bp Zoom in on locus 1 x3 CRISPR array Location: 1928-2090 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1928-2090 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1928-2090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXJ01000317.1 Clostridioides difficile FD299 DNA, sequence317, whole genome shotgun sequence

⇒Summary: seq-len = 2717 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2475 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-751 bp Gene: pfam05107:cas7b Type: Type-I Location: 744-1733 bp Gene: cd09693:cas5 Type: Type-I Location: 1735-2475 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXJ01000373.1 Clostridioides difficile FD299 DNA, sequence373, whole genome shotgun sequence

⇒Summary: seq-len = 1582 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1580 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 1-597 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 609-1580 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXJ01000128.1 Clostridioides difficile FD299 DNA, sequence128, whole genome shotgun sequence

⇒Summary: seq-len = 10440 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10296-10457 bp Zoom in on locus 1 x3 CRISPR array Location: 10296-10457 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10296-10457 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10296-10457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)