CRISPRone

CRISPRone report for GCA_004319205.1_ASM431920v1

♦ Seq 1: BIXL01000442.1 Clostridioides difficile FD301 DNA, sequence442, whole genome shotgun sequence

⇒Summary: seq-len = 1148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1148 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1148 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1148 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXL01000139.1 Clostridioides difficile FD301 DNA, sequence139, whole genome shotgun sequence

⇒Summary: seq-len = 10062 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4806-7389 bp Zoom in on locus 1 x4 x8 CRISPR array Location: 4806-5032 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4806-5032 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6894-7389 bp Num of repeats: 8 Spacers: s4-s10 CRISPR array Location: 6894-7389 bp Num of repeats: 8 Spacers: s4-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4806-5032 bp]: array | spacers
           [Locus range 6894-7389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXL01000329.1 Clostridioides difficile FD301 DNA, sequence329, whole genome shotgun sequence

⇒Summary: seq-len = 2757 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2598-2758 bp Zoom in on locus 1 x3 CRISPR array Location: 2598-2758 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2598-2758 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2598-2758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXL01000310.1 Clostridioides difficile FD301 DNA, sequence310, whole genome shotgun sequence

⇒Summary: seq-len = 3262 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 151-3260 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 151-891 bp Gene: pfam05107:cas7b Type: Type-I Location: 893-1882 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1875-3260 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXL01000012.1 Clostridioides difficile FD301 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 33267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7396-7688 bp Zoom in on locus 1 x5 CRISPR array Location: 7396-7688 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7396-7688 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7396-7688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXL01000111.1 Clostridioides difficile FD301 DNA, sequence111, whole genome shotgun sequence

⇒Summary: seq-len = 12069 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5417-11915 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 5417-7825 bp Gene: cd09693:cas5 Type: Type-I Location: 7852-8649 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8665-9678 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 9698-11173 bp Gene: pfam01881:cas6 Type: other Location: 11178-11915 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXL01000348.1 Clostridioides difficile FD301 DNA, sequence348, whole genome shotgun sequence

⇒Summary: seq-len = 2527 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-878 bp Zoom in on locus 1 x14 CRISPR array Location: 0-878 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-878 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXL01000266.1 Clostridioides difficile FD301 DNA, sequence266, whole genome shotgun sequence

⇒Summary: seq-len = 4482 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3994-4155 bp Zoom in on locus 1 x3 CRISPR array Location: 3994-4155 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3994-4155 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3994-4155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXL01000181.1 Clostridioides difficile FD301 DNA, sequence181, whole genome shotgun sequence

⇒Summary: seq-len = 7857 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3388-3748 bp Zoom in on locus 1 x6 CRISPR array Location: 3388-3748 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3388-3748 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3388-3748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXL01000162.1 Clostridioides difficile FD301 DNA, sequence162, whole genome shotgun sequence

⇒Summary: seq-len = 8511 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-148 bp Zoom in on locus 1 x3 CRISPR array Location: 0-148 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-148 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXL01000402.1 Clostridioides difficile FD301 DNA, sequence402, whole genome shotgun sequence

⇒Summary: seq-len = 1598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1602 bp Zoom in on locus 1 x25 CRISPR array Location: 0-1602 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 0-1602 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIXL01000375.1 Clostridioides difficile FD301 DNA, sequence375, whole genome shotgun sequence

⇒Summary: seq-len = 1909 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-1690 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 168-662 bp Gene: cd09634:cas1 Type: universal Location: 977-1690 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)