CRISPRone

CRISPRone report for GCA_004319225.1_ASM431922v1

♦ Seq 1: BIXM01000035.1 Clostridioides difficile FD302 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 26030 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25674-26032 bp Zoom in on locus 1 x6 CRISPR array Location: 25674-26032 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 25674-26032 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25674-26032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXM01000070.1 Clostridioides difficile FD302 DNA, sequence070, whole genome shotgun sequence

⇒Summary: seq-len = 16966 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11673-12095 bp Zoom in on locus 1 x7 CRISPR array Location: 11673-12095 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11673-12095 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11673-12095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXM01000289.1 Clostridioides difficile FD302 DNA, sequence289, whole genome shotgun sequence

⇒Summary: seq-len = 2069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1911-2071 bp Zoom in on locus 1 x3 CRISPR array Location: 1911-2071 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1911-2071 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1911-2071 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXM01000021.1 Clostridioides difficile FD302 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 36208 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28339-36204 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28339-30747 bp Gene: cd09693:cas5 Type: Type-I Location: 30774-31571 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31587-32600 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32620-34095 bp Gene: pfam01881:cas6 Type: other Location: 34100-34837 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35095-36204 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXM01000011.1 Clostridioides difficile FD302 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 45012 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12570-14483 bp Zoom in on locus 1 x10 x9 CRISPR array Location: 12570-13189 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 12570-13189 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 13926-14483 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 13926-14483 bp Num of repeats: 9 Spacers: s10-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12570-13189 bp]: array | spacers
           [Locus range 13926-14483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXM01000034.1 Clostridioides difficile FD302 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 26302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6998-16720 bp Zoom in on locus 1 x3 CRISPR array Location: 6998-7155 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6998-7155 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09725:cas2 Type: universal Location: 7339-7605 bp Gene: cd09722:cas1 Type: universal Location: 7608-8588 bp Gene: pfam01930:cas4 Type: Type-I Location: 8672-9109 bp Gene: COG1203:cas3 Type: Type-I Location: 9157-11478 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 11489-12190 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 12192-13106 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13108-14985 bp Gene: pfam01881:cas6 Type: other Location: 14991-15785 bp Gene: pfam13280:WYL Type: other Location: 15806-16720 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6998-7155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXM01000193.1 Clostridioides difficile FD302 DNA, sequence193, whole genome shotgun sequence

⇒Summary: seq-len = 5789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5447-5803 bp Zoom in on locus 1 x6 CRISPR array Location: 5447-5803 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5447-5803 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5447-5803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)