CRISPRone

CRISPRone report for GCA_004319265.1_ASM431926v1

♦ Seq 1: BIXO01000009.1 Clostridioides difficile FD304 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 51690 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3944-4235 bp Zoom in on locus 1 x5 CRISPR array Location: 3944-4235 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3944-4235 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3944-4235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXO01000094.1 Clostridioides difficile FD304 DNA, sequence094, whole genome shotgun sequence

⇒Summary: seq-len = 15015 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1198 bp Zoom in on locus 1 x19 CRISPR array Location: 0-1198 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 0-1198 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXO01000114.1 Clostridioides difficile FD304 DNA, sequence114, whole genome shotgun sequence

⇒Summary: seq-len = 12655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8756-9512 bp Zoom in on locus 1 x12 CRISPR array Location: 8756-9512 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8756-9512 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8756-9512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXO01000165.1 Clostridioides difficile FD304 DNA, sequence165, whole genome shotgun sequence

⇒Summary: seq-len = 7848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2095-3243 bp Zoom in on locus 1 x18 CRISPR array Location: 2095-3243 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2095-3243 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2095-3243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXO01000117.1 Clostridioides difficile FD304 DNA, sequence117, whole genome shotgun sequence

⇒Summary: seq-len = 12279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9451-10010 bp Zoom in on locus 1 x9 CRISPR array Location: 9451-10010 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9451-10010 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9451-10010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXO01000073.1 Clostridioides difficile FD304 DNA, sequence073, whole genome shotgun sequence

⇒Summary: seq-len = 18765 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516-5117 bp Zoom in on locus 1 x7 x4 x9 CRISPR array Location: 516-940 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 516-940 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2544-2768 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 2544-2768 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 4561-5117 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 4561-5117 bp Num of repeats: 9 Spacers: s10-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516-940 bp]: array | spacers
           [Locus range 2544-2768 bp]: array | spacers
           [Locus range 4561-5117 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXO01000123.1 Clostridioides difficile FD304 DNA, sequence123, whole genome shotgun sequence

⇒Summary: seq-len = 11484 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6023-6184 bp Zoom in on locus 1 x3 CRISPR array Location: 6023-6184 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6023-6184 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6023-6184 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXO01000014.1 Clostridioides difficile FD304 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 45040 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 223-8544 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 223-1332 bp Gene: unk Type: unknown Location: 1766-1942 bp Gene: pfam01881:cas6 Type: other Location: 2043-2780 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2785-4260 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4280-5296 bp Gene: cd09693:cas5 Type: Type-I Location: 5312-6109 bp Gene: cd09641:cas3HD Type: Type-I Location: 6136-8544 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXO01000049.1 Clostridioides difficile FD304 DNA, sequence049, whole genome shotgun sequence

⇒Summary: seq-len = 23494 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13835-23506 bp Zoom in on locus 1 x3 Gene: pfam13280:WYL Type: other Location: 13835-14722 bp Gene: pfam01881:cas6 Type: other Location: 14800-15537 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15543-17393 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17395-18309 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 18311-19012 bp Gene: COG1203:cas3 Type: Type-I Location: 19023-21344 bp Gene: pfam01930:cas4 Type: Type-I Location: 21359-21910 bp Gene: cd09722:cas1 Type: universal Location: 21913-22893 bp Gene: cd09725:cas2 Type: universal Location: 22896-23162 bp CRISPR array Location: 23346-23506 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 23346-23506 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23346-23506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXO01000226.1 Clostridioides difficile FD304 DNA, sequence226, whole genome shotgun sequence

⇒Summary: seq-len = 3841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-151 bp Zoom in on locus 1 x3 CRISPR array Location: 0-151 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-151 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXO01000158.1 Clostridioides difficile FD304 DNA, sequence158, whole genome shotgun sequence

⇒Summary: seq-len = 8496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2970-3587 bp Zoom in on locus 1 x10 CRISPR array Location: 2970-3587 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2970-3587 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2970-3587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIXO01000016.1 Clostridioides difficile FD304 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 41350 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8652-8745 bp Zoom in on locus 1 x2 CRISPR array Location: 8652-8745 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8652-8745 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8652-8745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)