CRISPRone

CRISPRone report for GCA_004319385.1_ASM431938v1

♦ Seq 1: BIXU01000019.1 Clostridioides difficile FD310 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 42200 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 547-8412 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 547-1656 bp Gene: pfam01881:cas6 Type: other Location: 1914-2651 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2656-4131 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4151-5164 bp Gene: cd09693:cas5 Type: Type-I Location: 5180-5977 bp Gene: cd09641:cas3HD Type: Type-I Location: 6004-8412 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXU01000053.1 Clostridioides difficile FD310 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 25330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2477-2897 bp Zoom in on locus 1 x7 CRISPR array Location: 2477-2897 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2477-2897 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2477-2897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXU01000178.1 Clostridioides difficile FD310 DNA, sequence178, whole genome shotgun sequence

⇒Summary: seq-len = 4861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4226-4783 bp Zoom in on locus 1 x9 CRISPR array Location: 4226-4783 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4226-4783 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4226-4783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXU01000167.1 Clostridioides difficile FD310 DNA, sequence167, whole genome shotgun sequence

⇒Summary: seq-len = 5763 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181-801 bp Zoom in on locus 1 x10 CRISPR array Location: 181-801 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 181-801 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 181-801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXU01000253.1 Clostridioides difficile FD310 DNA, sequence253, whole genome shotgun sequence

⇒Summary: seq-len = 1089 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-953 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-246 bp Gene: cd09652:cas6 Type: other Location: 258-953 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXU01000116.1 Clostridioides difficile FD310 DNA, sequence116, whole genome shotgun sequence

⇒Summary: seq-len = 11708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8731-8957 bp Zoom in on locus 1 x4 CRISPR array Location: 8731-8957 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8731-8957 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8731-8957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXU01000034.1 Clostridioides difficile FD310 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 33389 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29726-33386 bp Zoom in on locus 1 x24 Gene: cd09725:cas2 Type: universal Location: 29726-30016 bp Gene: cd09722:cas1 Type: universal Location: 30227-31234 bp Gene: pfam01930:cas4 Type: Type-I Location: 31260-31754 bp CRISPR array Location: 31839-33386 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 31839-33386 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31839-33386 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXU01000142.1 Clostridioides difficile FD310 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 8669 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7490-7651 bp Zoom in on locus 1 x3 CRISPR array Location: 7490-7651 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7490-7651 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7490-7651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXU01000169.1 Clostridioides difficile FD310 DNA, sequence169, whole genome shotgun sequence

⇒Summary: seq-len = 5626 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5-5625 bp Zoom in on locus 1 x25 CRISPR array Location: 5-1620 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 5-1620 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09641:cas3HD Type: Type-I Location: 1810-4368 bp Gene: cd09693:cas5 Type: Type-I Location: 4392-5132 bp Gene: pfam05107:cas7b Type: Type-I Location: 5134-5625 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5-1620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXU01000234.1 Clostridioides difficile FD310 DNA, sequence234, whole genome shotgun sequence

⇒Summary: seq-len = 1844 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1413-1691 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 1413-1691 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXU01000088.1 Clostridioides difficile FD310 DNA, sequence088, whole genome shotgun sequence

⇒Summary: seq-len = 16171 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1083-1375 bp Zoom in on locus 1 x5 CRISPR array Location: 1083-1375 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1083-1375 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1083-1375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIXU01000129.1 Clostridioides difficile FD310 DNA, sequence129, whole genome shotgun sequence

⇒Summary: seq-len = 10214 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-86 bp Zoom in on locus 1 x2 CRISPR array Location: 0-86 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-86 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-86 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)