CRISPRone

CRISPRone report for GCA_004319805.1_ASM431980v1

♦ Seq 1: BITJ01000035.1 Clostridioides difficile FD189 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 36600 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283-8148 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 283-1392 bp Gene: pfam01881:cas6 Type: other Location: 1650-2387 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2392-3867 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3887-4900 bp Gene: cd09693:cas5 Type: Type-I Location: 4916-5713 bp Gene: cd09641:cas3HD Type: Type-I Location: 5740-8148 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BITJ01000049.1 Clostridioides difficile FD189 DNA, sequence049, whole genome shotgun sequence

⇒Summary: seq-len = 29843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28452-29600 bp Zoom in on locus 1 x18 CRISPR array Location: 28452-29600 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 28452-29600 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28452-29600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BITJ01000001.1 Clostridioides difficile FD189 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 102518 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29994-40015 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 29994-30881 bp Gene: pfam01881:cas6 Type: other Location: 30959-31696 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 31702-33579 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 33581-34495 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 34497-35198 bp Gene: COG1203:cas3 Type: Type-I Location: 35209-37530 bp Gene: pfam01930:cas4 Type: Type-I Location: 37545-38015 bp Gene: cd09722:cas1 Type: universal Location: 38099-39079 bp Gene: cd09725:cas2 Type: universal Location: 39082-39348 bp CRISPR array Location: 39532-40015 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 39532-40015 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39532-40015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BITJ01000116.1 Clostridioides difficile FD189 DNA, sequence116, whole genome shotgun sequence

⇒Summary: seq-len = 8536 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3206-3628 bp Zoom in on locus 1 x7 CRISPR array Location: 3206-3628 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3206-3628 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3206-3628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BITJ01000008.1 Clostridioides difficile FD189 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 85470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60770-61195 bp Zoom in on locus 1 x7 CRISPR array Location: 60770-61195 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 60770-61195 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60770-61195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BITJ01000021.1 Clostridioides difficile FD189 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 50397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1485-1908 bp Zoom in on locus 1 x7 CRISPR array Location: 1485-1908 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1485-1908 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1485-1908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)