CRISPRone

CRISPRone report for GCA_004319865.1_ASM431986v1

♦ Seq 1: BIXA01000037.1 Clostridioides difficile FD288 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 26427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24269-24495 bp Zoom in on locus 1 x4 CRISPR array Location: 24269-24495 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24269-24495 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24269-24495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIXA01000025.1 Clostridioides difficile FD288 DNA, sequence025, whole genome shotgun sequence

⇒Summary: seq-len = 35655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35509-35667 bp Zoom in on locus 1 x3 CRISPR array Location: 35509-35667 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 35509-35667 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35509-35667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIXA01000177.1 Clostridioides difficile FD288 DNA, sequence177, whole genome shotgun sequence

⇒Summary: seq-len = 7066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3737-4294 bp Zoom in on locus 1 x9 CRISPR array Location: 3737-4294 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3737-4294 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3737-4294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIXA01000279.1 Clostridioides difficile FD288 DNA, sequence279, whole genome shotgun sequence

⇒Summary: seq-len = 1778 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89-1791 bp Zoom in on locus 1 x2 Gene: cd09634:cas1 Type: universal Location: 89-802 bp Gene: pfam01930:cas4 Type: Type-I Location: 1117-1611 bp CRISPR array Location: 1696-1791 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1696-1791 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1696-1791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIXA01000165.1 Clostridioides difficile FD288 DNA, sequence165, whole genome shotgun sequence

⇒Summary: seq-len = 7800 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 403-564 bp Zoom in on locus 1 x3 CRISPR array Location: 403-564 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 403-564 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 403-564 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIXA01000195.1 Clostridioides difficile FD288 DNA, sequence195, whole genome shotgun sequence

⇒Summary: seq-len = 5559 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1254-3836 bp Zoom in on locus 1 x8 x4 CRISPR array Location: 1254-1748 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1254-1748 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3611-3836 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 3611-3836 bp Num of repeats: 4 Spacers: s8-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1254-1748 bp]: array | spacers
           [Locus range 3611-3836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIXA01000225.1 Clostridioides difficile FD288 DNA, sequence225, whole genome shotgun sequence

⇒Summary: seq-len = 4030 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4027 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-1275 bp Gene: pfam05107:cas7b Type: Type-I Location: 1268-2257 bp Gene: cd09693:cas5 Type: Type-I Location: 2259-2999 bp Gene: cd09641:cas3HD Type: Type-I Location: 3023-4027 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIXA01000073.1 Clostridioides difficile FD288 DNA, sequence073, whole genome shotgun sequence

⇒Summary: seq-len = 17654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9967-10260 bp Zoom in on locus 1 x5 CRISPR array Location: 9967-10260 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9967-10260 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9967-10260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIXA01000121.1 Clostridioides difficile FD288 DNA, sequence121, whole genome shotgun sequence

⇒Summary: seq-len = 10383 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10095-10324 bp Zoom in on locus 1 x4 CRISPR array Location: 10095-10324 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 10095-10324 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10095-10324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIXA01000209.1 Clostridioides difficile FD288 DNA, sequence209, whole genome shotgun sequence

⇒Summary: seq-len = 4754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-752 bp Zoom in on locus 1 x12 CRISPR array Location: 0-752 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 0-752 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-752 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIXA01000001.1 Clostridioides difficile FD288 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 105346 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28398-36263 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28398-30806 bp Gene: cd09693:cas5 Type: Type-I Location: 30833-31630 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31646-32659 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32679-34154 bp Gene: pfam01881:cas6 Type: other Location: 34159-34896 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35154-36263 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)