CRISPRone

CRISPRone report for GCA_004349825.1_ASM434982v1

♦ Seq 1: SCWM01000048.1 Pseudomonas aeruginosa strain 174 scaffold_47, whole genome shotgun sequence

⇒Summary: seq-len = 49373 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38389-48937 bp Zoom in on locus 1 x14 x14 CRISPR array Location: 38389-39197 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38389-39197 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39380-39943 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39947-40975 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40986-41969 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41956-43257 bp Gene: COG1203:cas3 Type: Type-I Location: 43668-46898 bp Gene: cd09718:cas1 Type: universal Location: 46895-47869 bp CRISPR array Location: 48130-48937 bp Num of repeats: 14 Spacers: s14-s26 CRISPR array Location: 48130-48937 bp Num of repeats: 14 Spacers: s14-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38389-39197 bp]: array | spacers
           [Locus range 48130-48937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCWM01000041.1 Pseudomonas aeruginosa strain 174 scaffold_40, whole genome shotgun sequence

⇒Summary: seq-len = 63597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62150-63196 bp Zoom in on locus 1 x18 CRISPR array Location: 62150-63196 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 62150-63196 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62150-63196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)