CRISPRone

CRISPRone report for GCA_004349995.1_ASM434999v1

♦ Seq 1: SCXA01000042.1 Pseudomonas aeruginosa strain 157 scaffold_41, whole genome shotgun sequence

⇒Summary: seq-len = 84639 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32305-42680 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32305-33849 bp Gene: unk Type: unknown Location: 34933-35112 bp Gene: unk Type: unknown Location: 35296-35694 bp Gene: pfam00078:RT Type: other Location: 35844-37112 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 41811-42680 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCXA01000001.1 Pseudomonas aeruginosa strain 157 scaffold_0, whole genome shotgun sequence

⇒Summary: seq-len = 667529 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177352-187863 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 177352-178113 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 177352-178113 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 178178-178477 bp Gene: cd09719:cas1 Type: universal Location: 178474-179364 bp Gene: pfam08798:cas6e Type: other Location: 179391-179930 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 179977-180639 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 180641-181783 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 181793-182323 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 182320-183888 bp Gene: cd09641:cas3HD Type: Type-I Location: 183891-186572 bp CRISPR array Location: 187346-187863 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 187346-187863 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 177352-178113 bp]: array | spacers
           [Locus range 187346-187863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)