CRISPRone

CRISPRone report for GCA_004350085.1_ASM435008v1

♦ Seq 1: SCXF01000230.1 Pseudomonas aeruginosa strain 152 scaffold_229, whole genome shotgun sequence

⇒Summary: seq-len = 4647 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14-1121 bp Zoom in on locus 1 x19 CRISPR array Location: 14-1121 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 14-1121 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14-1121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCXF01000099.1 Pseudomonas aeruginosa strain 152 scaffold_98, whole genome shotgun sequence

⇒Summary: seq-len = 16330 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7073-16149 bp Zoom in on locus 1 x12 CRISPR array Location: 7073-7761 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 7073-7761 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 8010-8573 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8577-9605 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9616-10599 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 10586-11890 bp Gene: COG1203:cas3 Type: Type-I Location: 11948-15178 bp Gene: cd09718:cas1 Type: universal Location: 15175-16149 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7073-7761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)