CRISPRone

CRISPRone report for GCA_004350265.1_ASM435026v1

♦ Seq 1: SCXT01000151.1 Pseudomonas aeruginosa strain 134 scaffold_150, whole genome shotgun sequence

⇒Summary: seq-len = 20150 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1829 bp Zoom in on locus 1 x19 Gene: cd09719:cas1 Type: universal Location: 3-341 bp Gene: pfam09707:cas2 Type: universal Location: 338-637 bp CRISPR array Location: 702-1829 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 702-1829 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 702-1829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCXT01000290.1 Pseudomonas aeruginosa strain 134 scaffold_289, whole genome shotgun sequence

⇒Summary: seq-len = 8944 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103-1151 bp Zoom in on locus 1 x18 CRISPR array Location: 103-1151 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 103-1151 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103-1151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCXT01000078.1 Pseudomonas aeruginosa strain 134 scaffold_77, whole genome shotgun sequence

⇒Summary: seq-len = 18503 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-9209 bp Zoom in on locus 1 x12 Gene: COG1518:cas1 Type: universal Location: 2-526 bp Gene: pfam08798:cas6e Type: other Location: 553-1092 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1139-1801 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1803-2945 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2955-3485 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3482-5050 bp Gene: cd09641:cas3HD Type: Type-I Location: 5053-7734 bp CRISPR array Location: 8509-9209 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 8509-9209 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8509-9209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCXT01000130.1 Pseudomonas aeruginosa strain 134 scaffold_129, whole genome shotgun sequence

⇒Summary: seq-len = 13831 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106-10656 bp Zoom in on locus 1 x5 x12 Gene: cd09718:cas1 Type: universal Location: 106-1080 bp Gene: COG1203:cas3 Type: Type-I Location: 1077-4307 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4365-5669 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5656-6639 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6650-7678 bp Gene: cd09739:cas6f Type: other Location: 7682-8245 bp CRISPR array Location: 8430-8697 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8430-8697 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9969-10656 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 9969-10656 bp Num of repeats: 12 Spacers: s5-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8430-8697 bp]: array | spacers
           [Locus range 9969-10656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SCXT01000005.1 Pseudomonas aeruginosa strain 134 scaffold_4, whole genome shotgun sequence

⇒Summary: seq-len = 63580 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15951-16878 bp Zoom in on locus 1 x16 CRISPR array Location: 15951-16878 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 15951-16878 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15951-16878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)