CRISPRone

CRISPRone report for GCA_004350325.1_ASM435032v1

♦ Seq 1: SCYA01000077.1 Pseudomonas aeruginosa strain 126 scaffold_76, whole genome shotgun sequence

⇒Summary: seq-len = 9962 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-7092 bp Zoom in on locus 1 x19 Gene: cd09673:cas3f Type: Subtype-I-F Location: 1-1863 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1921-3225 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3212-4195 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4206-5234 bp Gene: cd09739:cas6f Type: other Location: 5238-5801 bp CRISPR array Location: 5985-7092 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 5985-7092 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5985-7092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCYA01000826.1 Pseudomonas aeruginosa strain 126 scaffold_825, whole genome shotgun sequence

⇒Summary: seq-len = 2234 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2204 bp Zoom in on locus 1 Gene: cd09673:cas3f Type: Subtype-I-F Location: 1-1233 bp Gene: cd09718:cas1 Type: universal Location: 1230-2204 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCYA01000489.1 Pseudomonas aeruginosa strain 126 scaffold_488, whole genome shotgun sequence

⇒Summary: seq-len = 3266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 855-3163 bp Zoom in on locus 1 x39 CRISPR array Location: 855-3163 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 855-3163 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 855-3163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)