CRISPRone

CRISPRone report for GCA_004350335.1_ASM435033v1

♦ Seq 1: SCWJ01000036.1 Pseudomonas aeruginosa strain 177 scaffold_35, whole genome shotgun sequence

⇒Summary: seq-len = 63761 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 517-1266 bp Zoom in on locus 1 x13 CRISPR array Location: 517-1266 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 517-1266 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 517-1266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCWJ01000020.1 Pseudomonas aeruginosa strain 177 scaffold_19, whole genome shotgun sequence

⇒Summary: seq-len = 99483 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88380-98979 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 88380-89488 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 88380-89488 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 89671-90234 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 90238-91266 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 91277-92260 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 92247-93548 bp Gene: COG1203:cas3 Type: Type-I Location: 93959-97189 bp Gene: cd09718:cas1 Type: universal Location: 97186-98160 bp CRISPR array Location: 98412-98979 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 98412-98979 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88380-89488 bp]: array | spacers
           [Locus range 98412-98979 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)