CRISPRone

CRISPRone report for GCA_004350455.1_ASM435045v1

♦ Seq 1: SCXB01000166.1 Pseudomonas aeruginosa strain 156 scaffold_165, whole genome shotgun sequence

⇒Summary: seq-len = 821 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412-720 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 412-560 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 412-560 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 632-720 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 632-720 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 412-560 bp]: array | spacers
           [Locus range 632-720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCXB01000047.1 Pseudomonas aeruginosa strain 156 scaffold_46, whole genome shotgun sequence

⇒Summary: seq-len = 47856 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38591-47721 bp Zoom in on locus 1 x14 CRISPR array Location: 38591-39399 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38591-39399 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39582-40145 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40149-41177 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41188-42171 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42158-43462 bp Gene: COG1203:cas3 Type: Type-I Location: 43520-46750 bp Gene: cd09718:cas1 Type: universal Location: 46747-47721 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38591-39399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCXB01000128.1 Pseudomonas aeruginosa strain 156 scaffold_127, whole genome shotgun sequence

⇒Summary: seq-len = 9222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5840-7007 bp Zoom in on locus 1 x20 CRISPR array Location: 5840-7007 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 5840-7007 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5840-7007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)