CRISPRone

CRISPRone report for GCA_004350525.1_ASM435052v1

♦ Seq 1: SCXJ01000007.1 Pseudomonas aeruginosa strain 146 scaffold_6, whole genome shotgun sequence

⇒Summary: seq-len = 161605 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5759-16270 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 5759-6520 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5759-6520 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 6585-6884 bp Gene: cd09719:cas1 Type: universal Location: 6881-7771 bp Gene: pfam08798:cas6e Type: other Location: 7798-8337 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 8384-9046 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 9048-10190 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 10200-10730 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 10727-12295 bp Gene: cd09641:cas3HD Type: Type-I Location: 12298-14979 bp CRISPR array Location: 15753-16270 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 15753-16270 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5759-6520 bp]: array | spacers
           [Locus range 15753-16270 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)