CRISPRone

CRISPRone report for GCA_004350895.1_ASM435089v1

♦ Seq 1: SCYV01001131.1 Pseudomonas aeruginosa strain 95 scaffold_1130, whole genome shotgun sequence

⇒Summary: seq-len = 1369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 569-1016 bp Zoom in on locus 1 x8 CRISPR array Location: 569-1016 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 569-1016 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 569-1016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCYV01000021.1 Pseudomonas aeruginosa strain 95 scaffold_20, whole genome shotgun sequence

⇒Summary: seq-len = 15382 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2674-12691 bp Zoom in on locus 1 x18 x7 CRISPR array Location: 2674-3721 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2674-3721 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 3904-4467 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4471-5499 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5510-6493 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6480-7784 bp Gene: COG1203:cas3 Type: Type-I Location: 7842-11072 bp Gene: cd09718:cas1 Type: universal Location: 11069-12043 bp CRISPR array Location: 12304-12691 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 12304-12691 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2674-3721 bp]: array | spacers
           [Locus range 12304-12691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)