CRISPRone

CRISPRone report for GCA_004351085.1_ASM435108v1

♦ Seq 1: SCZP01000436.1 Pseudomonas aeruginosa strain 55 scaffold_435, whole genome shotgun sequence

⇒Summary: seq-len = 4627 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 950-4625 bp Zoom in on locus 1 x25 CRISPR array Location: 950-2416 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 950-2416 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 2600-3163 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3167-4195 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4206-4625 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 950-2416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCZP01000602.1 Pseudomonas aeruginosa strain 55 scaffold_601, whole genome shotgun sequence

⇒Summary: seq-len = 2997 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95-1683 bp Zoom in on locus 1 x27 CRISPR array Location: 95-1683 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 95-1683 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 95-1683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCZP01000712.1 Pseudomonas aeruginosa strain 55 scaffold_711, whole genome shotgun sequence

⇒Summary: seq-len = 2154 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 949-1876 bp Zoom in on locus 1 x16 CRISPR array Location: 949-1876 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 949-1876 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 949-1876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCZP01000295.1 Pseudomonas aeruginosa strain 55 scaffold_294, whole genome shotgun sequence

⇒Summary: seq-len = 6652 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171-6649 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 171-1145 bp Gene: COG1203:cas3 Type: Type-I Location: 1142-4372 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4783-6084 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6071-6649 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SCZP01000455.1 Pseudomonas aeruginosa strain 55 scaffold_454, whole genome shotgun sequence

⇒Summary: seq-len = 4380 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3449-3655 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 3449-3655 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)