CRISPRone

CRISPRone report for GCA_004351225.1_ASM435122v1

♦ Seq 1: SCYO01000734.1 Pseudomonas aeruginosa strain 106 scaffold_733, whole genome shotgun sequence

⇒Summary: seq-len = 2246 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167-2244 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 167-1141 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 1138-2244 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCYO01000712.1 Pseudomonas aeruginosa strain 106 scaffold_711, whole genome shotgun sequence

⇒Summary: seq-len = 2342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 743-1910 bp Zoom in on locus 1 x20 CRISPR array Location: 743-1910 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 743-1910 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 743-1910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCYO01000602.1 Pseudomonas aeruginosa strain 106 scaffold_601, whole genome shotgun sequence

⇒Summary: seq-len = 2790 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2380-2688 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 2380-2528 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2380-2528 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2600-2688 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 2600-2688 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2380-2528 bp]: array | spacers
           [Locus range 2600-2688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCYO01000189.1 Pseudomonas aeruginosa strain 106 scaffold_188, whole genome shotgun sequence

⇒Summary: seq-len = 6881 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-5474 bp Zoom in on locus 1 x14 Gene: cd09673:cas3f Type: Subtype-I-F Location: 3-545 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 603-1907 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1894-2877 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2888-3916 bp Gene: cd09739:cas6f Type: other Location: 3920-4483 bp CRISPR array Location: 4667-5474 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 4667-5474 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4667-5474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)