CRISPRone

CRISPRone report for GCA_004351315.1_ASM435131v1

♦ Seq 1: SCYS01000153.1 Pseudomonas aeruginosa strain 98 scaffold_152, whole genome shotgun sequence

⇒Summary: seq-len = 12664 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3783-12561 bp Zoom in on locus 1 x6 CRISPR array Location: 3783-4111 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3783-4111 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09739:cas6f Type: other Location: 4294-4857 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4861-5889 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5900-6883 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6870-7853 bp Gene: COG1203:cas3 Type: Type-I Location: 8360-11590 bp Gene: cd09718:cas1 Type: universal Location: 11587-12561 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3783-4111 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCYS01000348.1 Pseudomonas aeruginosa strain 98 scaffold_347, whole genome shotgun sequence

⇒Summary: seq-len = 4834 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37-904 bp Zoom in on locus 1 x15 CRISPR array Location: 37-904 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37-904 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37-904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCYS01000865.1 Pseudomonas aeruginosa strain 98 scaffold_864, whole genome shotgun sequence

⇒Summary: seq-len = 1803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59-1588 bp Zoom in on locus 1 x26 CRISPR array Location: 59-1588 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 59-1588 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59-1588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)