CRISPRone

CRISPRone report for GCA_004351335.1_ASM435133v1

♦ Seq 1: SCYZ01000349.1 Pseudomonas aeruginosa strain 88 scaffold_348, whole genome shotgun sequence

⇒Summary: seq-len = 5070 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 356-985 bp Zoom in on locus 1 x11 CRISPR array Location: 356-985 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 356-985 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 356-985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCYZ01000486.1 Pseudomonas aeruginosa strain 88 scaffold_485, whole genome shotgun sequence

⇒Summary: seq-len = 3884 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-2766 bp Zoom in on locus 1 x9 Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3-479 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 490-1518 bp Gene: cd09739:cas6f Type: other Location: 1522-2085 bp CRISPR array Location: 2259-2766 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2259-2766 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2259-2766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCYZ01001135.1 Pseudomonas aeruginosa strain 88 scaffold_1134, whole genome shotgun sequence

⇒Summary: seq-len = 1405 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 757-1326 bp Zoom in on locus 1 x10 CRISPR array Location: 757-1326 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 757-1326 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 757-1326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCYZ01000700.1 Pseudomonas aeruginosa strain 88 scaffold_699, whole genome shotgun sequence

⇒Summary: seq-len = 3586 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3584 bp Zoom in on locus 1 Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3-1067 bp Gene: COG1203:cas3 Type: Type-I Location: 1077-3584 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SCYZ01001137.1 Pseudomonas aeruginosa strain 88 scaffold_1136, whole genome shotgun sequence

⇒Summary: seq-len = 1404 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 221-1195 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 221-1195 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SCYZ01000328.1 Pseudomonas aeruginosa strain 88 scaffold_327, whole genome shotgun sequence

⇒Summary: seq-len = 5245 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 523-2725 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 523-1494 bp Gene: unk Type: unknown Location: 1604-2290 bp Gene: cd09693:cas5 Type: Type-I Location: 2318-2725 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)