CRISPRone

CRISPRone report for GCA_004351545.1_ASM435154v1

♦ Seq 1: SCZK01000086.1 Pseudomonas aeruginosa strain 60 scaffold_85, whole genome shotgun sequence

⇒Summary: seq-len = 15715 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3363-15230 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 3363-4948 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 3363-4948 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 5132-5695 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5699-6727 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6738-7721 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7708-9009 bp Gene: COG1203:cas3 Type: Type-I Location: 9420-12650 bp Gene: cd09718:cas1 Type: universal Location: 12647-13621 bp CRISPR array Location: 13882-15230 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 13882-15230 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3363-4948 bp]: array | spacers
           [Locus range 13882-15230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCZK01000095.1 Pseudomonas aeruginosa strain 60 scaffold_94, whole genome shotgun sequence

⇒Summary: seq-len = 14932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 438-1066 bp Zoom in on locus 1 x11 CRISPR array Location: 438-1066 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 438-1066 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 438-1066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCZK01000004.1 Pseudomonas aeruginosa strain 60 scaffold_3, whole genome shotgun sequence

⇒Summary: seq-len = 76782 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35180-46061 bp Zoom in on locus 1 x44 Gene: cd09641:cas3HD Type: Type-I Location: 35180-37414 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 37465-38139 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 38136-39929 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 39926-40795 bp Gene: pfam01930:cas4 Type: Type-I Location: 40814-41446 bp Gene: cd09721:cas1 Type: universal Location: 41450-42490 bp Gene: cd09725:cas2 Type: universal Location: 42500-42790 bp Gene: unk Type: unknown Location: 42951-44285 bp CRISPR array Location: 42972-45860 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 42972-45860 bp Num of repeats: 44 Spacers: s1-s43 Gene: unk Type: unknown Location: 44475-45644 bp Gene: cd09735:cas8f Type: Subtype-I-F Location: 45687-46061 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42972-45860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)