CRISPRone

CRISPRone report for GCA_004351605.1_ASM435160v1

♦ Seq 1: SCZR01000343.1 Pseudomonas aeruginosa strain 42 scaffold_342, whole genome shotgun sequence

⇒Summary: seq-len = 5250 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 469-2479 bp Zoom in on locus 1 x34 CRISPR array Location: 469-2479 bp Num of repeats: 34 Spacers: s1-s33 CRISPR array Location: 469-2479 bp Num of repeats: 34 Spacers: s1-s33 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 469-2479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCZR01000562.1 Pseudomonas aeruginosa strain 42 scaffold_561, whole genome shotgun sequence

⇒Summary: seq-len = 2835 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2834 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 1-210 bp Gene: COG1203:cas3 Type: Type-I Location: 207-2834 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCZR01000067.1 Pseudomonas aeruginosa strain 42 scaffold_66, whole genome shotgun sequence

⇒Summary: seq-len = 15558 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1874 bp Zoom in on locus 1 x15 Gene: COG1518:cas1 Type: universal Location: 2-745 bp CRISPR array Location: 1006-1874 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1006-1874 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1006-1874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCZR01000245.1 Pseudomonas aeruginosa strain 42 scaffold_244, whole genome shotgun sequence

⇒Summary: seq-len = 6862 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5692 bp Zoom in on locus 1 x13 Gene: cd09673:cas3f Type: Subtype-I-F Location: 2-472 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 883-2184 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2171-3154 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3165-4193 bp Gene: cd09739:cas6f Type: other Location: 4197-4760 bp CRISPR array Location: 4944-5692 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4944-5692 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4944-5692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)