CRISPRone

CRISPRone report for GCA_004351665.1_ASM435166v1

♦ Seq 1: SCZU01000134.1 Pseudomonas aeruginosa strain 33 scaffold_133, whole genome shotgun sequence

⇒Summary: seq-len = 22099 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299-10122 bp Zoom in on locus 1 x27 Gene: cd09718:cas1 Type: universal Location: 299-1273 bp Gene: COG1203:cas3 Type: Type-I Location: 1270-4500 bp Gene: unk Type: unknown Location: 5205-5471 bp Gene: unk Type: unknown Location: 5507-5659 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5842-6747 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6758-7786 bp Gene: cd09739:cas6f Type: other Location: 7790-8353 bp CRISPR array Location: 8538-10122 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 8538-10122 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8538-10122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SCZU01000844.1 Pseudomonas aeruginosa strain 33 scaffold_843, whole genome shotgun sequence

⇒Summary: seq-len = 1354 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25-1252 bp Zoom in on locus 1 x21 CRISPR array Location: 25-1252 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 25-1252 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25-1252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SCZU01000846.1 Pseudomonas aeruginosa strain 33 scaffold_845, whole genome shotgun sequence

⇒Summary: seq-len = 2292 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-213 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-213 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SCZU01000057.1 Pseudomonas aeruginosa strain 33 scaffold_56, whole genome shotgun sequence

⇒Summary: seq-len = 18500 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4968-5596 bp Zoom in on locus 1 x11 CRISPR array Location: 4968-5596 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4968-5596 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4968-5596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)