CRISPRone

CRISPRone report for GCA_004369915.1_ASM436991v1

♦ Seq 1: RWKY01000007.1 Pseudomonas aeruginosa strain 22.1 IPC1605_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 240581 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178470-179818 bp Zoom in on locus 1 x23 CRISPR array Location: 178470-179818 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 178470-179818 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178470-179818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWKY01000034.1 Pseudomonas aeruginosa strain 22.1 IPC1605_34.1, whole genome shotgun sequence

⇒Summary: seq-len = 49951 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 934-12381 bp Zoom in on locus 1 x29 x14 CRISPR array Location: 934-2644 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 934-2644 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09718:cas1 Type: universal Location: 2904-3878 bp Gene: COG1203:cas3 Type: Type-I Location: 3875-7105 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7516-8817 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8804-9787 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9798-10826 bp Gene: cd09739:cas6f Type: other Location: 10830-11393 bp CRISPR array Location: 11578-12381 bp Num of repeats: 14 Spacers: s29-s41 CRISPR array Location: 11578-12381 bp Num of repeats: 14 Spacers: s29-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 934-2644 bp]: array | spacers
           [Locus range 11578-12381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)