CRISPRone

CRISPRone report for GCA_004369945.1_ASM436994v1

♦ Seq 1: RWLA01000017.1 Pseudomonas aeruginosa strain 20 IPC1603_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 76418 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28476-38614 bp Zoom in on locus 1 x13 x14 CRISPR array Location: 28476-29224 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 28476-29224 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 29484-30458 bp Gene: COG1203:cas3 Type: Type-I Location: 30455-33685 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 33743-35047 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 35034-36017 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36028-37056 bp Gene: cd09739:cas6f Type: other Location: 37060-37623 bp CRISPR array Location: 37807-38614 bp Num of repeats: 14 Spacers: s13-s25 CRISPR array Location: 37807-38614 bp Num of repeats: 14 Spacers: s13-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28476-29224 bp]: array | spacers
           [Locus range 37807-38614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLA01000010.1 Pseudomonas aeruginosa strain 20 IPC1603_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 270336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7343-8030 bp Zoom in on locus 1 x12 CRISPR array Location: 7343-8030 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 7343-8030 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7343-8030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)