CRISPRone

CRISPRone report for GCA_004369975.1_ASM436997v1

♦ Seq 1: RWLC01000024.1 Pseudomonas aeruginosa strain 18 IPC1601_24.1, whole genome shotgun sequence

⇒Summary: seq-len = 50285 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90-11896 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 90-1439 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 90-1439 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1699-2673 bp Gene: COG1203:cas3 Type: Type-I Location: 2670-5900 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6311-7612 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7599-8582 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8593-9621 bp Gene: cd09739:cas6f Type: other Location: 9625-10188 bp CRISPR array Location: 10373-11896 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 10373-11896 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90-1439 bp]: array | spacers
           [Locus range 10373-11896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLC01000001.1 Pseudomonas aeruginosa strain 18 IPC1601_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 838383 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207564-208192 bp Zoom in on locus 1 x11 CRISPR array Location: 207564-208192 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207564-208192 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207564-208192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)