CRISPRone

CRISPRone report for GCA_004370015.1_ASM437001v1

♦ Seq 1: RWLF01000006.1 Pseudomonas aeruginosa strain 15 IPC1598_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 418095 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181449-202083 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 181449-182192 bp Gene: unk Type: unknown Location: 182525-183397 bp Gene: unk Type: unknown Location: 183433-183999 bp Gene: cd09637:cas4 Type: other Location: 184007-186658 bp Gene: pfam13280:WYL Type: other Location: 193460-194479 bp Gene: pfam13280:WYL Type: other Location: 197318-198193 bp Gene: unk Type: unknown Location: 198324-198611 bp Gene: unk Type: unknown Location: 198746-199324 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 199717-202083 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLF01000022.1 Pseudomonas aeruginosa strain 15 IPC1598_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 66706 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19337-30077 bp Zoom in on locus 1 x26 x11 CRISPR array Location: 19337-20865 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 19337-20865 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 21126-22100 bp Gene: COG1203:cas3 Type: Type-I Location: 22097-25327 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25385-26689 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26676-27659 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27670-28698 bp Gene: cd09739:cas6f Type: other Location: 28702-29265 bp CRISPR array Location: 29450-30077 bp Num of repeats: 11 Spacers: s26-s35 CRISPR array Location: 29450-30077 bp Num of repeats: 11 Spacers: s26-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19337-20865 bp]: array | spacers
           [Locus range 29450-30077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)