CRISPRone

CRISPRone report for GCA_004370205.1_ASM437020v1

♦ Seq 1: RWLS01000018.1 Pseudomonas aeruginosa strain 3 IPC1585_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 72689 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22223-34090 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 22223-23572 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22223-23572 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23832-24806 bp Gene: COG1203:cas3 Type: Type-I Location: 24803-28033 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28444-29745 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29732-30715 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30726-31754 bp Gene: cd09739:cas6f Type: other Location: 31758-32321 bp CRISPR array Location: 32506-34090 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32506-34090 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22223-23572 bp]: array | spacers
           [Locus range 32506-34090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLS01000009.1 Pseudomonas aeruginosa strain 3 IPC1585_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 254980 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 206813-215901 bp Zoom in on locus 1 x20 CRISPR array Location: 206813-208109 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 206813-208109 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 208292-208582 bp Gene: cd09721:cas1 Type: universal Location: 208592-209632 bp Gene: pfam01930:cas4 Type: Type-I Location: 209636-210268 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 210287-211156 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 211153-212946 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 212943-213617 bp Gene: cd09641:cas3HD Type: Type-I Location: 213667-215901 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 206813-208109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWLS01000003.1 Pseudomonas aeruginosa strain 3 IPC1585_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 710387 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207763-208331 bp Zoom in on locus 1 x10 CRISPR array Location: 207763-208331 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 207763-208331 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207763-208331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)