CRISPRone

CRISPRone report for GCA_004370305.1_ASM437030v1

♦ Seq 1: RWMD01000014.1 Pseudomonas aeruginosa strain 5014375428 IPC1515_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 64076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 314-581 bp Zoom in on locus 1 x5 CRISPR array Location: 314-581 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 314-581 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 314-581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWMD01000017.1 Pseudomonas aeruginosa strain 5014375428 IPC1515_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 9691 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 319-9376 bp Zoom in on locus 1 x2 x7 CRISPR array Location: 319-407 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 319-407 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 590-1153 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1157-2185 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2196-3179 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3166-4470 bp Gene: COG1203:cas3 Type: Type-I Location: 4528-7758 bp Gene: cd09718:cas1 Type: universal Location: 7755-8729 bp CRISPR array Location: 8990-9376 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 8990-9376 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 319-407 bp]: array | spacers
           [Locus range 8990-9376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWMD01000015.1 Pseudomonas aeruginosa strain 5014375428 IPC1515_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 21492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20966-21176 bp Zoom in on locus 1 x4 CRISPR array Location: 20966-21176 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20966-21176 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20966-21176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWMD01000001.1 Pseudomonas aeruginosa strain 5014375428 IPC1515_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1401222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 962188-962935 bp Zoom in on locus 1 x13 CRISPR array Location: 962188-962935 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 962188-962935 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 962188-962935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)