CRISPRone

CRISPRone report for GCA_004370455.1_ASM437045v1

♦ Seq 1: RWMP01000006.1 Pseudomonas aeruginosa strain 1042828174-21 IPC1503_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 645842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209914-210482 bp Zoom in on locus 1 x10 CRISPR array Location: 209914-210482 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 209914-210482 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 209914-210482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWMP01000017.1 Pseudomonas aeruginosa strain 1042828174-21 IPC1503_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 53852 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2907-12965 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 2907-3474 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2907-3474 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 3657-4220 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4224-5252 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5263-6246 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6233-7534 bp Gene: COG1203:cas3 Type: Type-I Location: 7945-11175 bp Gene: cd09718:cas1 Type: universal Location: 11172-12146 bp CRISPR array Location: 12398-12965 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 12398-12965 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2907-3474 bp]: array | spacers
           [Locus range 12398-12965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)