CRISPRone

CRISPRone report for GCA_004370505.1_ASM437050v1

♦ Seq 1: RWMQ01000040.1 Pseudomonas aeruginosa strain 1042828174-20 IPC1502_40.1, whole genome shotgun sequence

⇒Summary: seq-len = 60219 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19293-30093 bp Zoom in on locus 1 x15 x23 CRISPR array Location: 19293-20161 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 19293-20161 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 20345-20908 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 20912-21940 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 21951-22934 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 22921-24225 bp Gene: COG1203:cas3 Type: Type-I Location: 24283-27513 bp Gene: cd09718:cas1 Type: universal Location: 27510-28484 bp CRISPR array Location: 28745-30093 bp Num of repeats: 23 Spacers: s15-s36 CRISPR array Location: 28745-30093 bp Num of repeats: 23 Spacers: s15-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19293-20161 bp]: array | spacers
           [Locus range 28745-30093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)