CRISPRone

CRISPRone report for GCA_004370515.1_ASM437051v1

♦ Seq 1: RWMR01000007.1 Pseudomonas aeruginosa strain 4124363474-14 IPC1501_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 412629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 411366-412114 bp Zoom in on locus 1 x13 CRISPR array Location: 411366-412114 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 411366-412114 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 411366-412114 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWMR01000012.1 Pseudomonas aeruginosa strain 4124363474-14 IPC1501_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 119434 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20450-31049 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 20450-21018 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20450-21018 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 21269-22243 bp Gene: COG1203:cas3 Type: Type-I Location: 22240-25470 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25881-27182 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27169-28152 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28163-29191 bp Gene: cd09739:cas6f Type: other Location: 29195-29758 bp CRISPR array Location: 29942-31049 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 29942-31049 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20450-21018 bp]: array | spacers
           [Locus range 29942-31049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)