CRISPRone

CRISPRone report for GCA_004370775.1_ASM437077v1

♦ Seq 1: RWNN01000042.1 Pseudomonas aeruginosa strain 6102 IPC1349_42.1, whole genome shotgun sequence

⇒Summary: seq-len = 10408 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 318-10095 bp Zoom in on locus 1 x2 x19 CRISPR array Location: 318-406 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 318-406 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 589-1152 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1156-2184 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2195-3178 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3165-4469 bp Gene: COG1203:cas3 Type: Type-I Location: 4527-7757 bp Gene: cd09718:cas1 Type: universal Location: 7754-8728 bp CRISPR array Location: 8989-10095 bp Num of repeats: 19 Spacers: s2-s19 CRISPR array Location: 8989-10095 bp Num of repeats: 19 Spacers: s2-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 318-406 bp]: array | spacers
           [Locus range 8989-10095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWNN01000035.1 Pseudomonas aeruginosa strain 6102 IPC1349_35.1, whole genome shotgun sequence

⇒Summary: seq-len = 26331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25805-26015 bp Zoom in on locus 1 x4 CRISPR array Location: 25805-26015 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 25805-26015 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25805-26015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWNN01000003.1 Pseudomonas aeruginosa strain 6102 IPC1349_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 533588 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47979-48727 bp Zoom in on locus 1 x13 CRISPR array Location: 47979-48727 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 47979-48727 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47979-48727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWNN01000055.1 Pseudomonas aeruginosa strain 6102 IPC1349_55.1, whole genome shotgun sequence

⇒Summary: seq-len = 1978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1398-1666 bp Zoom in on locus 1 x5 CRISPR array Location: 1398-1666 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1398-1666 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1398-1666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)