CRISPRone

CRISPRone report for GCA_004370815.1_ASM437081v1

♦ Seq 1: RWNQ01000001.1 Pseudomonas aeruginosa strain 6097.3 IPC1346_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 763541 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200749-211076 bp Zoom in on locus 1 x14 x5 CRISPR array Location: 200749-201570 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 200749-201570 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 201635-201934 bp Gene: cd09719:cas1 Type: universal Location: 201931-202821 bp Gene: pfam08798:cas6e Type: other Location: 202848-203387 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 203434-204096 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 204098-205240 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 205250-205780 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 205777-207345 bp Gene: cd09641:cas3HD Type: Type-I Location: 207348-210029 bp CRISPR array Location: 210804-211076 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 210804-211076 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200749-201570 bp]: array | spacers
           [Locus range 210804-211076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWNQ01000003.1 Pseudomonas aeruginosa strain 6097.3 IPC1346_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 601481 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110786-111953 bp Zoom in on locus 1 x20 CRISPR array Location: 110786-111953 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 110786-111953 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110786-111953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)