CRISPRone

CRISPRone report for GCA_004370875.1_ASM437087v1

♦ Seq 1: RWLG01000020.1 Pseudomonas aeruginosa strain 14.2 IPC1597_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 49623 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38088-48343 bp Zoom in on locus 1 x18 x11 CRISPR array Location: 38088-39135 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38088-39135 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 39318-39881 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39885-40913 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40924-41907 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41894-43198 bp Gene: COG1203:cas3 Type: Type-I Location: 43256-46486 bp Gene: cd09718:cas1 Type: universal Location: 46483-47457 bp CRISPR array Location: 47715-48343 bp Num of repeats: 11 Spacers: s18-s27 CRISPR array Location: 47715-48343 bp Num of repeats: 11 Spacers: s18-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38088-39135 bp]: array | spacers
           [Locus range 47715-48343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLG01000001.1 Pseudomonas aeruginosa strain 14.2 IPC1597_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 915049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498207-499015 bp Zoom in on locus 1 x14 CRISPR array Location: 498207-499015 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 498207-499015 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498207-499015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)