CRISPRone

CRISPRone report for GCA_004370925.1_ASM437092v1

♦ Seq 1: RWLK01000010.1 Pseudomonas aeruginosa strain 11 IPC1593_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 115481 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83876-94423 bp Zoom in on locus 1 x14 x14 CRISPR array Location: 83876-84683 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 83876-84683 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 84866-85429 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 85433-86461 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 86472-87455 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 87442-88743 bp Gene: COG1203:cas3 Type: Type-I Location: 89154-92384 bp Gene: cd09718:cas1 Type: universal Location: 92381-93355 bp CRISPR array Location: 93616-94423 bp Num of repeats: 14 Spacers: s14-s26 CRISPR array Location: 93616-94423 bp Num of repeats: 14 Spacers: s14-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 83876-84683 bp]: array | spacers
           [Locus range 93616-94423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLK01000001.1 Pseudomonas aeruginosa strain 11 IPC1593_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1054668 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 642253-642821 bp Zoom in on locus 1 x10 CRISPR array Location: 642253-642821 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 642253-642821 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 642253-642821 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)